Package: dcifer
Type: Package
Title: Genetic Relatedness Between Polyclonal Infections
Version: 1.5.2
Authors@R: 
    person("Inna", "Gerlovina", 
           role = c("aut", "cre"),
           email = "innager@berkeley.edu", 
           comment = c(ORCID = "0000-0002-7772-7473"))
Description: An implementation of Dcifer (Distance for complex
        infections: fast estimation of relatedness), an identity by
        descent (IBD) based method to calculate genetic relatedness
        between polyclonal infections from biallelic and multiallelic
        data. The package includes functions that format and preprocess
        the data, implement the method, and visualize the results.
        Gerlovina et al. (2022) <doi:10.1093/genetics/iyac126>.
Imports: stats, utils, graphics
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
URL: https://github.com/EPPIcenter/dcifer,
        https://eppicenter.github.io/dcifer/
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Depends: R (>= 4.4.0)
Repository: https://eppicenter.r-universe.dev
Date/Publication: 2026-05-06 22:29:47 UTC
RemoteUrl: https://github.com/eppicenter/dcifer
RemoteRef: HEAD
RemoteSha: b6255509bba4e96e2f6af1dd033a7ac45e1b2684
NeedsCompilation: yes
Packaged: 2026-06-05 06:06:36 UTC; root
Author: Inna Gerlovina [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7772-7473>)
Maintainer: Inna Gerlovina <innager@berkeley.edu>