Package: moire
Title: Multiplicity of Infection and Allele Frequency Recovery from
        Noisy Polyallelic Genetics Data
Version: 3.7.0
Authors@R: c(
    person(given = "Maxwell",
           family = "Murphy",
           role = c("aut", "cre"),
           email = "mm@maxmurphy.dev",
           comment = c(ORCID = "0000-0003-0332-4388")),
    person(given = "Bryan",
           family = "Greenhouse",
           role = c("aut", "ths"),
           email = "bryan.greenhouse@ucsf.edu",
           comment = c(ORCID = "0000-0003-0287-9111")))
Description: A Markov Chain Monte Carlo (MCMC) based approach to
        Bayesian estimation of individual level multiplicity of
        infection, within host relatedness, and population allele
        frequencies from polyallelic genetic data. Implements the model
        described in Murphy and Greenhouse (2024)
        <doi:10.1093/bioinformatics/btae619>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: bzip2
SystemRequirements: C++17, GNU make
LinkingTo: Rcpp, RcppProgress, RcppParallel, BH
Imports: Rcpp, RcppProgress, RcppParallel, dplyr, tidyr, stats,
        parallel, purrr, rlang, ggplot2
URL: https://github.com/EPPIcenter/moire,
        https://eppicenter.github.io/moire/,
        https://eppicenter.ucsf.edu/resources
BugReports: https://github.com/EPPIcenter/moire/issues
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, forcats, testthat (>= 3.0.0), parallelly
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev
Repository: https://eppicenter.r-universe.dev
Date/Publication: 2026-09-15 17:50:47 UTC
RemoteUrl: https://github.com/eppicenter/moire
RemoteRef: HEAD
RemoteSha: 6ae03862fe1be61a85e715ce359f613658cf142e
NeedsCompilation: yes
Packaged: 2026-09-15 18:45:00 UTC; root
Author: Maxwell Murphy [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0332-4388>),
  Bryan Greenhouse [aut, ths] (ORCID:
    <https://orcid.org/0000-0003-0287-9111>)
Maintainer: Maxwell Murphy <mm@maxmurphy.dev>