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Dcifer: Genetic Distance Between Polyclonal Infections8 months ago
Read and reformat data, estimate COI and population allele frequencies | Estimate relatedness | Visualize the results | Further analysis of related samples
dcifer 1.5.2Inna Gerlovina vignetteDcifer.Rmd
Application to Namibia2 years ago
Running MOIRE on Namibia data
moire 3.5.0Maxwell Murphy namibia.Rmd
MCMC Demonstration3 years ago
Simulation and MCMC | Estimating COI | Estimating effective COI | What is effective COI? | Estimating Relatedness | Estimating allele frequencies | Estimating expected heterozygosity
moire 3.5.0Maxwell Murphy mcmc_demo.Rmd