Package: moire 3.5.0
Maxwell Murphy
moire: Multiplicity of Infection and Allele Frequency Recovery from Noisy Polyallelic Genetics Data
A Markov Chain Monte Carlo (MCMC) based approach to Bayesian estimation of individual level multiplicity of infection, within host relatedness, and population allele frequencies from polyallelic genetic data.
Authors:
moire_3.5.0.tar.gz
moire_3.5.0.zip(r-4.5)moire_3.5.0.zip(r-4.4)moire_3.5.0.zip(r-4.3)
moire_3.5.0.tgz(r-4.4-x86_64)moire_3.5.0.tgz(r-4.4-arm64)moire_3.5.0.tgz(r-4.3-x86_64)moire_3.5.0.tgz(r-4.3-arm64)
moire_3.5.0.tar.gz(r-4.5-noble)moire_3.5.0.tar.gz(r-4.4-noble)
moire_3.5.0.tgz(r-4.4-emscripten)moire_3.5.0.tgz(r-4.3-emscripten)
moire.pdf |moire.html✨
moire/json (API)
NEWS
| # Install 'moire' in R: |
| install.packages('moire', repos = c('https://eppicenter.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eppicenter/moire/issues
- mcmc_results - MCMC results from using the packaged simulated data and calling 'run_mcmc()'
- namibia_data - Genetic and epidemiological data from Namibia
- regional_allele_frequencies - Allele frequencies for different regions
- simulated_data - Simulated genotyping data
Last updated 17 days agofrom:656dcfbb82. Checks:OK: 3 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 06 2024 |
| R-4.5-win-x86_64 | OK | Nov 06 2024 |
| R-4.5-linux-x86_64 | OK | Nov 06 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 06 2024 |
| R-4.4-mac-x86_64 | NOTE | Nov 06 2024 |
| R-4.4-mac-aarch64 | NOTE | Nov 06 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 06 2024 |
| R-4.3-mac-x86_64 | NOTE | Nov 06 2024 |
| R-4.3-mac-aarch64 | NOTE | Nov 06 2024 |
Exports:calculate_hecalculate_med_allele_freqscalculate_naive_allele_frequenciescalculate_naive_coicalculate_naive_coi_offsetload_delimited_dataload_long_form_dataplot_chain_swapsrdirichletrun_mcmcsimulate_allele_frequenciessimulate_datasimulate_observed_allelesimulate_observed_genotypesimulate_sample_coisimulate_sample_genotypesummarize_allele_freq_fnsummarize_allele_freqssummarize_coisummarize_effective_coisummarize_epsilon_negsummarize_epsilon_possummarize_hesummarize_relatedness
Dependencies:BHclicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerRcppRcppParallelRcppProgressrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
